BIOVIAScientific Informatics
Basic Next Generation Sequencing (NGS)
This course introduces users to the Next Generation Sequencing (NGS) repository and some of the basic NGS components. The NGS repository serves as the central data and metadata storage hub for NGS experiments, reference sequences, features, variants, and other data types. In addition to learning how to create, manage, and work with their NGS repository, students will be introduced to the NGS collection’s mapping, variant detection, and reporting components.
- Level
- Fundamental
- Length
- 4 hours
- Product
- Pipeline Pilot
- Delivery
- Instructor-led
Topics covered
- Building a Repository
- Analysis: SNP Detection
- Viewers
- Optional Topics
- Reporting Tools
- Mapping Components
- de novo Assembly
- Variant Detection (including structural variation)
- Useful Information
- Repository Scope
- Paired End Reads for Illumina
- Performance
Prerequisites
Pipeline Pilot Fundamentals, PilotScript, Sequence Analysis, basic understanding of NGS technology
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